first fixes

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/colgem@23 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
first fixes

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/colgem@24 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
sde code works now from R console

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/colgem@25 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
fixed simulatedBinaryDatedTree.default

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/colgem@26 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
fixed calculate.cluster.size.moments.from.model so it can be run from command line

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/colgem@27 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
added cg.sde.define that defines the F G etc functions for the SDE system

git-svn-id: svn://svn.r-forge.r-project.org/svnroot/colgem@28 edb9625f-4e0d-4859-8d74-9fd3b1da38cb