Kinetics parsing

This one is to be done after the **species_parsing** PR, it's fully compatible with all the rest.

The only thing it does is to change the obsolete method ```active_species_inverse_name_map``` into the method ```species_inverse_name_map``` in the kinetics reading method, namely ```read_reaction_set_data```.

Thus the only commit to look at is  15d7391 (Reading the kinetics was obsolete), the three following merges are for compatibility.