redirected testing files to interal files in resources, began implementation of features plugin
added resources
changed output directory
Merge pull request #9 from SeqWare/feature/pluginsim

redirected testing files to interal files in resources, began implementa...
Working gatk and junit test

Co-ordinate for sam tools dependency
Merge pull request #10 from SeqWare/feature/working_gatk_tests

Working gatk and junit test
Merge branch 'develop' into feature/picardapi

Conflicts:
	seqware-qe-testing/src/main/java/io/seqware/queryengine/sandbox/testing/impl/GATKBackendTest.java