Test
Improving TestAltLocs and fixing issue with SiftsChainToUniprotMapping
- now TestAltLocs will test 3PIU with both pdb and cif parsers, before
it depended whether the AtomCache was initialised to one or the other
type of file so result was a bit unpredictable
- SiftsChainToUniprotMapping was not downloading the sifts file and
simply reading a blank file. This was making the corresponding test fail
if run stand-alone (not if run as part of a full mvn intall, in that
case the file was getting downloaded by a previous test)
merging fix for loading issue from sbliven
resolving #76 fixing problem when parsing altLocs
Merge branch 'testsissue'
now using new rules for forking unit test threads
fixing NPE with TestBonds #103
Merge pull request #91 from emckee2006/master

Remove Compile warning in a case where we are subverting the type system
for the fix for #91 to work I believe we need to be more careful with CompoundSets
porting OBO file parser from BioJava 1 to BioJava 3 #33
adding a simple junit test
Added bond generation for mmCIF files
Merging with trunk
Merge branch 'master' of github.com:biojava/biojava
unit test to reproduce #106
only update original seqres groups, when matching worked without problems
more refactoring. Taking out BioJava1 change model. fixes #33 and #105
fixing another problem with seqres and ATOM mapping #106
 need to make sure the setup is called before every test, if run the first time, otherwise problems with seqres alignment #106
making sure we build a jar for this module