[WIP] Initial NCMC Implementaion

...itration object

Two modified routines have been added:  update_ncmc and setPartialTitrationState
Many more edits to come.
We don't want to use a VerletIntegrator here, since the statistics are wonky.  I think we want to use a velocity Verlet CustomIntegrator, updating the Context parameters in between VV steps.

See here for a VelocityVerletCustomIntegrator:
https://github.com/choderalab/repex/blob/master/repex/integrators.py#L148-L192