General doc line for Adaptors/Experts
General doc line for filters
General doc line for interpreters
Add documentation for parameters in BamReadcount related modules
Add documentation for parameters in FlankingRegion expert/adaptor
Add documentation for parameters in FPKM expert/adaptor
Add documention for parameters in Joinx related experts/adaptors
Add documentation for parameters in Vep related modules
Add documentation for parameters in Generic filters
add vcf_id and vcf_description to filters
bugfix: assignment of reference_fasta and alt_fasta was swapped
remove unneeded parameter
use q{} instead of escaping '
rename HomoPolymer to Homopolymer
rename homo-polymer to homopolymer
bump homopolymer test data version
bugfixes and other minor improvements
Merge branch 'master' into component_descriptions

Conflicts:
	lib/perl/Genome/VariantReporting/Suite/BamReadcount/Adaptor.pm
documentation for reporters
update expected lister test data