Change directory for imput file.
include data folder to ignore file
Change input file directory
update ignore file
update input directory
Correct directory for incoming images data
correct out going peak files directory
Include an index to make sure data is processed correctly
Allow the passing of the file name to the file creator for final file
Change peak prompts
Add the array for printing the peaks used.
Include file names in writing to final file. Also write a peaks used
file.