renamed assembly.mk to global_assembly.mk
added local_assembly.mk
added merge_list.txt for Cufflinks
added Seqclean
bumped up memory to 64gb
added rules for oasesM
updated
renamed run_gimm2.sh to run_gimme.sh
updated code
add Biopython
added gimme.mk
added rsem-output-cufflinks-to-fasta.py
added blat_job.sh
deleted a commented line
added new scripts
deleted unused scritps
deleted Ensembl models
added rules for RSEM
added rules for RSEM
updated