Merge remote-tracking branch 'origin/feature/brian_bionimbus_bwa_improvements' into feature/brian_bionimbus_bwa_improvements
This is safer, the previous cleanup hack would cause the workflow to fail since scripts were deleted before launched
Added todo item
Comment that shows how to query on all samples regardless of state
Changing to query all the states via cgquery, that way I won't reanalyze a sample that still being procesed by GNOS following upload
Merge branch 'feature/brian_bionimbus_bwa_improvements' into feature/junjun_add_qc