- add isValidSequence method into CompoundSet interface. Implemented.
- add deprecated annotation on  verifySequence
- Implemented isValidSequence method from CompoundSet interface
- add deprecated annotation on  verifySequence
Merge pull request #165 from jgrzebyta/master

Replaced  method verifySequence by isValidSequence
A fix for one of the issues reported in #162
Chain.getSeqResGroups(String type) is now correctly implemented
Fixing the other half of #162
Better logging and remove some warnings, #155
Solving issue #160
Merge pull request #166 from benjamintboyle/master

Convert core package to use slf4j #155
Merge pull request #167 from josemduarte/master

Fixing #162
Merge branch 'master' of https://github.com/biojava/biojava
Merge pull request #168 from josemduarte/master

Solving issue #160
Solving issue #145
Merge pull request #170 from benjamintboyle/master

Convert aaproperties and alignment packages to slf4j #155
Adding missing log4j2.xml files and unifying config across modules #155