Merge pull request #36 from anehrkor/master

Several bug fixes
adding updates to purge all jobs and to resubmit failed jobs
adding Debug option to main Makefile and DebugSetup.sh script to give instructions
adding Debug option to main Makefile and DebugSetup.sh script to give instructions
adding Debug option to CommonUtils Makefile.standalone
Merge pull request #37 from inugent/FailedJobsandDebug

Failed jobsand debug
Add -Wall flag to compiler to catch issues with bad coding style general bugs
Merge pull request #38 from inugent/FailedJobsandDebug2

Add -Wall flag to compiler to catch issues with bad coding style general...