Added pandocfilters submodule
Added lines to template to prevent latex figure captions
First new attempt at altering pandoc behaviour with filters. [tick] and [cross] are now special flags that are replaced with output type specific icons. Figures now default to png or pdf depending on output (now vector for pdfs).
Removing commented out code
Removed unused path
Testing different pandoc markdown table formats.
Merge branch 'master' of https://github.com/SciLifeLab/ngi_reports into SciLifeLab-master
Consolidated import lines
Merge branch 'SciLifeLab-master'
Added common module for project_summary report. Added functionality to get project name from the piper XML file if it's in the current working directory
Made the output directory inside 'delivery' when we have the XML file, eg. for piper runs. Moved some more generic stuff into the common module.
Renamed testing directory
Updated structure of Senthil's code to try to make origin of class variables clearer and more separate.
Merge pull request #6 from ewels/master

Updates to pandoc template processing