Getting rid of global variables, adding in type specifications.
Refactoring to make multiple constructors for Networks depending on level of user input.
Update .gitignore.
Added save to file for pictures.
Convert multiple functions into methods for Network contructor.
Convert nnodes to integer.
Reorganise files
Refactoring network generating code (used to be called generate_networks).
Refactoring evolveclock file - getting rid of global constants etc.
Refactoring to remove global constants, and making files into modules.
Refactoring (dynamic_simulation file) to make generic module.
File that generates the general network evolution parameters into a hash.:
Refactoring generally, made into a module.
Refactoring all code.
Moved into lib.
Moved into lib.
Moved into lib.
Added clock specific parameter generating function, other general refactoring of all code.
Reorganised files, refactoring generally, and adding sub-directories.
Merge branch 'master' into refactor