CgHub: add gmt command tree
CgHub: mv gene torrent to cg hub dir
CgHub: update gene torrent class name
CgHub: add base class
CgHub: gene torrent uses base class
CgHub: mv metadata from instdata import to gmt cg hub
CG Hub: update metadata class name
CG Hub: add query cmd to get metadata
CG Hub: add help to gene torrent
CgHub: wrap anaylsis id in quotes; update test
CgHub: remove query retrieving from metadata; update tests
CgHub: update tcga importer
CgHub: old class names used in tcga bam
Use updated docm vcfs
CgHub: add verify success and correct base class to gene torrent; update tests
CgHub: move credential file into calculated class property
CgHub: use env genome-perl in test shebang.
Merge pull request #227 from ebelter/cg-hub

Cg Hub
Merge pull request #234 from apregier/update-docm-in-vr

Use updated docm vcfs in variant reporting