underflow on real data

git-svn-id: http://beast-mcmc.googlecode.com/svn@6607 ca793f91-a31e-0410-b540-2769d408b6a1
rescaling likes to avoid underflow

git-svn-id: http://beast-mcmc.googlecode.com/svn@6608 ca793f91-a31e-0410-b540-2769d408b6a1
Implemented a simple serialization to enable cloning of MCMC chains amongst processors for parallel implementation. Reads and writes a MarkovChain OK in tests.

git-svn-id: http://beast-mcmc.googlecode.com/svn@6609 ca793f91-a31e-0410-b540-2769d408b6a1
Independence samplers disguised as Gibbs operators.

git-svn-id: http://beast-mcmc.googlecode.com/svn@6610 ca793f91-a31e-0410-b540-2769d408b6a1
Opened new MDS code in dr.app.beagle.multidimensionalscaling

git-svn-id: http://beast-mcmc.googlecode.com/svn@6611 ca793f91-a31e-0410-b540-2769d408b6a1
Update camel case

git-svn-id: http://beast-mcmc.googlecode.com/svn@6612 ca793f91-a31e-0410-b540-2769d408b6a1
Update camel case

git-svn-id: http://beast-mcmc.googlecode.com/svn@6613 ca793f91-a31e-0410-b540-2769d408b6a1
Java skeleton implementation

git-svn-id: http://beast-mcmc.googlecode.com/svn@6614 ca793f91-a31e-0410-b540-2769d408b6a1
Change MDS initialization interface

git-svn-id: http://beast-mcmc.googlecode.com/svn@6615 ca793f91-a31e-0410-b540-2769d408b6a1
Changed interface signatures

git-svn-id: http://beast-mcmc.googlecode.com/svn@6616 ca793f91-a31e-0410-b540-2769d408b6a1
Changed interface signatures

git-svn-id: http://beast-mcmc.googlecode.com/svn@6617 ca793f91-a31e-0410-b540-2769d408b6a1
Fixed the build

git-svn-id: http://beast-mcmc.googlecode.com/svn@6618 ca793f91-a31e-0410-b540-2769d408b6a1
Link MDS to jni cpp.

git-svn-id: http://beast-mcmc.googlecode.com/svn@6619 ca793f91-a31e-0410-b540-2769d408b6a1
 MDSL Compiles

git-svn-id: http://beast-mcmc.googlecode.com/svn@6620 ca793f91-a31e-0410-b540-2769d408b6a1