Mybranch

Hallo Martin,

meine Arbeit am TBP ist nun fast beendet, ich selbst werde voraussichtlich nicht mehr am IDLmerger arbeiten. Wenn du es für sinnvoll erachtest, kannst du gerne die Änderungen in deinen Branch mit aufnehmen.

Hier die wichtigsten Änderungen (auf Englisch, da aus meinem Work Report):
- documentation (descriptions/remarks/instructions) of modules
- extension and improvement of shell output information
- main: insertion of functionality and button for group_by_cell (normalisation per cell vs. image)
- main: implemented calculation of mRNA amount without transcription sites and insertion into database
- adjusted histogram plots to Aouefa's wishes (e.g. relative y-axis, box for total number of cells and median intensity for all cells)
- enabled insertion of tokens in GUI (before only pseudo-field as tokens were taken from merger_methods.p)
- fixed problem in enhance_spots function with overwriting columns when several modes/tokens
- in cells table replaced NULL by 0 in enhance_cells function (convenient for Excel analysis lateron)
- set pathway for all output to output folder
- in merger.py implemented abortion of program when maskpath equals locpath (before only in merger_methods.py where it has no influence on program run from GUI)
- improved scatter plots function (equal axis and all combinations of tokens enabled)
- README with instructions for IDLmerger (checked by Ivo Maintz, TBP)

Viele Grüße,
Dominique