bowtie 1.0.1
graph-tool 2.2.31

Closes #802.
insighttoolkit 4.5.2

Closes #824.
bowtie2 2.2.2
hotspot 4.1.0

Closes #827
ucsc-genome-browser 298
scarpa 0.241: New formula

Scarpa is a stand-alone scaffolding tool for NGS data. It can be used
together with virtually any genome assembler and any NGS read mapper
that supports SAM format.
snpeff 3.5h
igvtools 2.3.32
R: link with Accelerate framework

By default R should link against the Accelerate framework.

Closes #825.
field3d 1.4.3
lammps: install examples dir

Closes #808.
orocos-kdl 1.2.2 (new formula)

Closes #415.
sais 2.4.1: New formula

An implementation of the induced sorting algorithm

sais is a very simple and small library that provides an
implementation of the induced sorting [1] based suffix array
construction algorithm. The algorithm runs in O(n) worst-case time,
and MAX(2n, 4k) worst-case extra working space, where n and k are the
length of the input string and the number of alphabets.