bugfix of the error checking logic
remove object_with_translations as first step to refactoring
overwrite object subroutine for ReporterPlan so that filters and interpreters are attached there
implement object_with_translations subroutine directly on the plan objects
improved error message
Merge branch 'master' into rna_seq

Conflicts:
	lib/perl/Genome/VariantReporting/Framework/Component/Adaptor.pm
Merge branch 'master' into rna_seq
Merge branch 'master' into rna_seq
Merge branch 'master' into rna_seq
Refactor VepInterpreter.pm and add a new filter SpliceNonsynonymousFilter.pm
Add unit test for SpliceNonsynonymousFilter.pm
code format change
add a test to ensure that filters and interpreters attached to reporter are translated correctly
add where clause to work order items

I was confused why `items()` was returning different values than LIMS's
website.  Then I discovered that they have a status.  I think it makes
sense to add the where clause.  Originally, I was also going to add an
all_items without the clause but I don't know if we really ever care
about non-active work order items.
simplify xitems

I don't know why this function exists but it's equivalent to `items()`.
fix typo
remove commented code/footers
remove documentation
limiting to active excluded completed
Coverge Report: add method to get/calculate target total bp; renamed methods