Add functionality/script to check coverage for a specific seqrun or sample from the filesystem
Start changing to seqrun- and sample-specific sbatch files
Generate sbatch files using separate functions for seqrun- and sample-level analyses
Typo
Update Charon updating for sample to use slurm job ids
Update Charon status after launching a job
Remove newline
Various bugfixes relating to paths; generate the setup.xml from within the sbatch file