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Hey @katyhuff,

This is also built on #5. I've added a decent amount of content and made some comments based on both your comments and content. Let's iterate on this PR as you see fit; I'm happy to change the language as needed.
Abdellatif Yacout has implemented some agent-based behavior in his ANL tool (DYMOND?).

![image](https://cloud.githubusercontent.com/assets/393899/3878106/3d2dec76-216c-11e4-91d8-95b4d4b47eb8.png)