Cleaned up outline for results of modeling section
PySB implementation of Almeida basic model
PySB files for enzymatic and schwarz models
Fixed error in Schwarz model

The pore forming protein is not consumed in pore formation in the
Schwarz model.
Added placeholder paragraphs for Kushnareva, Almeida
Removed model bax_schwarz_reversible

Since in the Schwarz model pores are formed from the "mem" state, which
is reversible as part of translocation, Bax dissociates (and hence pores
are reversible) by default. So this model made no sense. Better to
implement a separate Bax_schwarz_irreversible.
Added option to prevent pore Bax from retrotranslocating

The problem was how to implement the Schwarz model (which lacks a
separate Bax activation step) with irreversible pore formation. One
approach would have been to have the Bax at the membrane simply convert
into a pore. However, this would have involved the creation of a
separate pore function and the connection with reversibility of membrane
binding would have been lost. Instead, I modified the translocation
function to allow the case in which translocation away from the membrane
is conditional on the Bax not being in a pore, which should have the
same effect.
Plots of 140311 normalized by Fmax

Was interested to see if kinetics look the same once the curves are
normalized to magnitude. The answer is that the first 6 concentrations
do but after that the curve shapes change.
New perm models fit to 140311 data
Testing fits of phenom models to simple mech models
Merge branch 'thesis'