INCOMPATIBLE CHANGE TO CONFIG FILE:
change config file to use stepsPerPeriod and coolperiods/histperiods
(all based on trap frequency) rather than scaled time units directly;
this should allow us to do proper phase matchin by having an integer
number of steps per period.
Merge branch 'devel'
Commit 4c8882f (Implement logging) requires std=c++11 or std=gnu++11 to be set for Linux.
This commit adapts the makefile accordingly.
Requiring C++11 might also allow us to remove (some) boost dependencies. This remains to be done.
Two frequency trap definition.
Working two frequency trap.
adjust time unit for cosine decay parameters
INCOMPATIBLE CHANGE TO CONFIG FILE:
change config file to use stepsPerPeriod and coolperiods/histperiods
(all based on trap frequency) rather than scaled time units directly;
this should allow us to do proper phase matchin by having an integer
number of steps per period.
Merge commit 'origin/retime^' into twoFreq

Conflicts:
	src/ccmd_sim.cpp
Now use Incompatible integrator params.

Save coordinates for povray.
Create default test configuration.
Add preliminary ion swapping for reactions.
4 Threads for Coulomb force.
Adds controllable multithreading to coulomb_force.

New parameters to set number of threads used in multithreading.