Work on XMI-MSIM plugin started
small bugfix
Work seems to be finished for now: back to Bruno...

Example works fine
XMSI file added for comparison
added support for detector crystal transmission
move to use of xmi_get_hdf5_data_file in plug-in
clone code written... seems to be working
More work.. nasty bug though
Bug fixed it seems: OpenMP support fully operational
modifications made for XRayStudio compatibility
Bugfix//Cleanup

This commit fixes a bug in spectrum::Clone which was triggered when a
continuous spectrum is defined.

Furthermore, some debugging messages were removed
Merge branch 'openmp' of https://github.com/tschoonj/xrmc into devqt

Conflicts:
	src/main/Makefile.am
	src/sample/xrmc_sample.h
	src/source/xrmc_source.h
	src/spectrum/xrmc_spectrum.h
Merge branch 'openmp' of https://github.com/tschoonj/xrmc into devqt
Merge branch 'master' of https://github.com/tschoonj/xrmc into devqt
Merged CPC installation fixes
Hopefully solved conflicts: results from running examples look correct
Small changes for xraystudio compatibility

Conflicts:
	src/main/Makefile.am
Other changes for xraystudio compatibility
Changes to conform file reading to c++ standard rather than c
Other changes for better integration in xraystudio
forgot one file
Fixes configure problem/XMI-MSIM plugin fixes
compiler warning fixed in qvolume.cpp
The Save method was changed for xraystudio compatibility
The "Save" command in the main input file now takes an additional string parameters, the name of the data to be saved, which for the detectorarray device is only one, i.e. "Image"
The "SaveUnconvoluted" method of xmi-msim detector was removed
Instead, two data types can be saved by the commands:
Save Detector ConvolutedImage output.dat
or
Save Detector UnconvolutedImage output.dat
The Link command in the main input files is obsolete and has been removed
the Loadparams  command in the main input files is obsolete and has been removed
XMI-MSIM support restored after Bruno's changed to Save routine

Also encapsulated openmp pragmas in _OPENMP ifdefs in order to avoid
compiler warnings