Initial commit
Adding NAU.py
Adding SU.py
Added OSU.py (Operating System Utilities) and incorporated utilities from /Lucks_Lab/Lucks_Lab_Papers/04_Chappell_Activator_discovery/Code/RNA_binding.py
Adding LucksLabUtils_config.py and related changes to OSU.py
Inserted one more /home/ayu/rotations/Lucks/RNAstructure/data_tables/ in LucksLabUtils_config.config()
SU.py now has functions for stochastic, partition, VARNA, and ct2dot. Added /home/ayu/bin/VARNAv3-9.jar:/home/ayu/bin/VARNAv3-9.jar:/home/ayu/bin/VARNAv3-9.jar:/home/ayu/bin/VARNAv3-9.jar for VARNA in LucksLab_Utilities.py
efn2 functions in SU.py
Added a refactored version of targets_analyzer to the repo.
Added cutadapt versions of analyze_spats_targets and adapter_trimmer
Removed targets_analyzer, moving to spats repo
Removed adapter trimming scripts that were accidentally added
	Adding new scripts to convert spats output to rdat files,to average several spats runs, and example input file
Hamming distance and bugfix
Utilities for parsing KineFold .rnm output and creating .dat files
Merge branch 'master' of https://github.com/LucksLab/LucksLab_Utilities
RC addition in NAU.parse_reactivity
Reactivities to rho text file in SU.py
Merge https://github.com/LucksLab/LucksLab_Utilities
Adding library_analysis.py that collects statistics for a pair of paired-end sequencing libraries