add sciclone plots1
sciclone update2
Whitespace
add sciclone to clinseq wkflw
whitespace
update which VAFs to use for sciclone
add test for clinseq sciclone
check for build before waiting on them
use common_name instead
refactor Base
refactor snv_indel_report
separate clonality plot for each datatype
update clinseq utils
ignore X if not female
remove functions that were moved to Util.pm
use Utils class instead of exported subroutines
update sciclone test
pass array by reference
use Utils as a class
add test option