Untested pipe to train maker to perform gene prediction.
Merge branch 'augustus'
Now accepts multiple EST files. Will accepts files in .fastq.gz format, concatenate them, unzip them and
convert them to .fa format.
Corrected if statement to detect if input files are in fasta or fastq format.
Corrected error, if input rna files are not in .gz format.
corrected errors in step where perl edits maker control files.
Removed MPI submission for maker.
Corrected setting of est2genome option in maker_opts.ctl
A script to train augustus using RNAseq data and known protein sequence.
Fixed merge conflicts
Will now run on SGE.
Corrected misisng hash on spacer line.
A program to parse .gff3 files output from PASA into .gff files accepted by augustus.