also clean pami code with 'make clean'

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
usse battles, victories, and defeats for synchronization

Link: https://github.com/GeneAssembly/biosal/issues/651
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
don't display debug messages in walker

Link: https://github.com/GeneAssembly/biosal/issues/651
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
fix white spaces and style in pami_transport

Link: https://github.com/GeneAssembly/biosal/issues/453
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
put parents first in assembly XML file

Link: https://github.com/GeneAssembly/biosal/issues/662
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add message to mark vertex

Link: https://github.com/GeneAssembly/biosal/issues/663
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add timer for graph traversal

Link: https://github.com/GeneAssembly/biosal/issues/651
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
this implementation for the unitig algorithm is too large

Link: https://github.com/GeneAssembly/biosal/issues/651
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
use flags instead

Link: https://github.com/GeneAssembly/biosal/issues/664
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add visitor actor script

Link: https://github.com/GeneAssembly/biosal/issues/664
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
using visitors before walkers simplifies the code a lot

Link: https://github.com/GeneAssembly/biosal/issues/664
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add an abstraction to fetch a vertex neighborhood

Link: https://github.com/GeneAssembly/biosal/issues/666
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
fetch parents

Link: https://github.com/GeneAssembly/biosal/issues/667
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
fetch parents and children in neighborhood

Link: https://github.com/GeneAssembly/biosal/issues/667
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
modify priority schedulign algorithm

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
improve scheduling for visitor-like pattern

Link: https://github.com/GeneAssembly/biosal/issues/673
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
rename ACTION_ASSEMBLY_GET_STARTING_VERTEX to ACTION_ASSEMBLY_GET_STARTING_KMER

Link: https://github.com/GeneAssembly/biosal/issues/668
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
select parent and child

Link: https://github.com/GeneAssembly/biosal/issues/664
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add some steps in visitor

Link: https://github.com/GeneAssembly/biosal/issues/664
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
unitig_visitor: check parent for mismatch

Link: https://github.com/GeneAssembly/biosal/issues/664
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>