Merge pull request #12 from wtsi-npg/devel

Devel
Merge pull request #13 from wtsi-npg/master

srl changes
safety asserts for some fixed length buffers
Merge pull request #66 from srl147/devel

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Merge pull request #67 from wtsi-npg/devel

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Merge pull request #68 from srl147/devel

Devel
Merge pull request #69 from wtsi-npg/devel

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Merge pull request #14 from wtsi-npg/devel

Devel
Merge pull request #70 from srl147/devel

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Merge pull request #71 from wtsi-npg/devel

Devel
Merge pull request #15 from wtsi-npg/master

update
Bug fix re return values from makeSurvTable()
Merge pull request #72 from jenniferliddle/master

Bug fix re return values from makeSurvTable()
Oops! Undo most of previous change.
Merge pull request #73 from jenniferliddle/master

Oops! Undo (most of) previous changes
Merge pull request #74 from srl147/devel

code now better handles bam files with no alignments
Merge pull request #75 from wtsi-npg/devel

Devel
Merge pull request #76 from wtsi-npg/master

Tagged 10.12
resolve confict: take condition on one assert, leaving in additonal two asserts checking buffer size
Alter read name parsing: start finding lane, tile, x, y, from the beginning of the last four ':' separated fields