Removed median curves. Logistic curves are fit for all replicates, then
the mean is taken for each parameter: starting OD, lag, max growth rate,
asymptote, and growth level. The mean logistic model is computed using
the mean parameters.
Removal of old parsing scripts.
Added functionality for processing data without plate information.
Create heatmap of growth level metric (not fully tested).
- Fixed bug in calling logistic function.
- Code clean up.
Completed growth heatmap function.
Added growth curve plot functionality. Still need to debug.
Figure generation.
- (Update) Growth level heatmap.
- (New) Growth curves for sample's replicates.
- (New) Growth curves for median samples.
Figure generation.
- (New) Moved figure code to separate module PMFigures.py
- (Update) Code cleanup.
Growth level
- (Update) Growth level for 'mean' logistic curve is recalculated instead of averaged.
Sample data.
- Initial commit of sample data (C. sedlakii 119).
Merge branch 'develop'