Minor optimisation on fetch_all_by_name
Made open_file safe wrt arg assignment and validation. Also restricted make_path to output files. Tweaked _handle_exit_status $err_string
minor revisions to _get_schema_build. Now uses assert_ref and better pod
removed some spurious warning
Added create_DBConnection_from_options to support DBConnection geenration when connecting to non-Ensembl DB
Added many methods from old pwm mappings scripts
Added randomise bed file and explode_fasta
1st pass at fixing motif mapping pipeline: Lots moved out to MotifTools. Now uses all available pfm files from last 2 releases. Job parallelisation & matrix specific outputs to avoid horrible greping issues. Ad-hoc lsf job management and many other improvements
Added stand alone script to run_moods