This commit was manufactured by cvs2svn to create branch 'branch-
ensembl-74'.

Sprout from master 2013-11-28 10:53:50 UTC Simon Brent <sb23@sanger.ac.uk> 'Add Apache 2 license to code'
Delete:
    htdocs/components/02_LayoutManager.js
    htdocs/components/10_Content.js
    htdocs/components/22_dynamic_content.css
    htdocs/components/25_ConfigMatrix.js
    modules/EnsEMBL/Web/Apache/Handlers.pm
    modules/EnsEMBL/Web/DBSQL/ConfigAdaptor.pm
    modules/EnsEMBL/Web/Document/Element/Configurator.pm
    modules/EnsEMBL/Web/Document/HTML/SpeciesPage.pm
    modules/EnsEMBL/Web/ImageConfig.pm
    modules/EnsEMBL/Web/Object/Slice.pm
    modules/EnsEMBL/Web/ViewConfig/Matrix.pm
Updated to use new API call
Added new saurian alignments
Check for out-dated cached BAM indexes
Added line break to fix layout issues on large browser windows
Updated to remove statement that we don't support HTTPS (we do now) and made it clear that tabix is only needed for large remote files
oops = instead of eq
fix capitalisation
Improved availability calls for RNA structure
Changed SecondaryStructure node to use renamed availability call
Tweaked to return undef if no secondary structure
Added alternative output if no secondary structure
Extra images (variation data)
revert perl 5.14 changes for e74
revert perl 5.14 changes for e74
Updated FAQ link
Database sizes for new release.
Use the clinical significance icons
Update the 'clinical_significance' method and remove the method 'clinical_significance_colour' (replaced by the clinical significance icons)
Updated Apache version in typed instructions