cgates: fixes to rollup_genes
Merge branch 'develop' of github.com:umich-brcf-bioinf/Jacquard into develop
EX-94 (cgates): Adjust calc and metaheader to reference TIR instead of TAR for Strelka AF calc
EX_94 (cgates): Reformat AF to make code more readable.
Merge remote-tracking branch 'origin/develop' into
tag_anomalous_variants

Conflicts:
	test/functional_tests/02_tag/benchmark/tiny_strelka.normalized.jacquardTags.vcf