Update Reporting

Fixes addressing failing dashboard tests

https://github.com/fedorov/Reporting/compare/bce75...86017
Merge pull request #496 from SlicerRt/update-GelDosimetry-4.3

ENH: GelDosimetry 0.1.0: Extension created
COMP: Include vtkObjectFactory.h to address compile error reported in Slicer bug tracking #3493.
Merge pull request #501 from lchauvin/update-DiceComputation-4.3

COMP: Include vtkObjectFactory.h to address compile error reported in Slicer bug tracking #3493.
Merge pull request #503 from SlicerRt/update-GelDosimetry-4.3

ENH: GelDosimetry 0.1.1: Coefficients are not removed from the fitted po...
BUG: Wrong variable was used. DTIPrep_BUILD_SLICER_EXTENSION was used instead of FiberViewerLight_BUILD_SLICER_EXTENSION
ENH: Removed dependencies that were not necessary when compiled as a Slicer extension
BUG: QWT_Library information was handled incorrectly when FiberViewerLight was build as a Superbuild and not as an extension
BUG: Update of Superbuild. It is possible to build FiberViewerLight as a Superbuild project even if it is build as a Slicer extension
Merge pull request #512 from fbudin69500/update-FiberViewerLight-4.3

BUG: Wrong variable was used. DTIPrep_BUILD_SLICER_EXTENSION was used in...
ENH: remove DWIPrivateLibrary that was empty and improvement of packaging as a Slicer extension
ENH: By default, compilation of all the tools statically
BUG: dtiestimDTI_WLS_Test was not passing. We updated the test and the baseline image
COMP: Make building more robust.
BUG: Fix Cmake warning
DTIProcess/CMake/SlicerExtensionsConfigureMacros.cmake:174:50
COMP: got rid of need for itkV3Compatibility
ENH: Modification of dtiestim version to 1.1.2 after last modification ( mask filter precision )
ENH: Addition of a larger tolerance for direction and origin difference when applying a mask filter. New tolerance set to 0.001 instead of default tolerance (1e-06).
ENH: Let the choice to change INSTALL_* directories
BUG: removed a warning form fibertrack
ENH&BUG: Install paths were not given from Superbuild project and static compila
tion had problems. Addition of a possibility to Superbuild the project independe
ntly from being an extension
BUG: this->ProcessObject::GetOutput(1) must be a valid output or program segmentation faults.
ENH: Remove old command line parser commented out code.
ENH: Verification of the version of ITK chosen. Warning message if wrong version chosen. This verification was done only if ITK was not found, which was a bug
STYLE: Remove debugging statements in configure step.
COMP: TransformWriter is more strict in ITKv4.5 about type matching
STYLE: Remove unnecessary file.
COMP: Fixed compilation with new SlicerExecutionModel
ENH: allow mask to be different in origin and spacing
ENH: ctest when stand-alone and executable-only build option
BUG: std::isnan doesn't exist on Windows. Builds DTIAtlasFiberAnalyzerLauncher even on Linux
ENH: Updated DTIProcess version and better packaging for Slicer extension
BUG: Updated Superbuild issues. Extension_DIR was set when using Superbuild even if FiberViewerLight was not build as an extension
BUG: Tests were not performed if DTIAtlasFiberAnalyzer was built as an extension
STYLE: Since there was already a tag "dti_tract_stat_1.4" on NITRC, the version number of DTIAtlasFiberAnalyzer in its xml description file was changed to 1.4.1
COMP: Add required parameters to SEMMacroBuildCLI for FiberCompare
BUG: inverse_rescale_p_value was not declared in void Processing::WritingDataInVTK
ENH: MergeStatWithFiber: Allows to inverse the p-value mapping
ENH: MergeStatWithFiber: Maps Arclength using the closest fiber point
ENH: dtitractstat: rewrote sorting functions using std::sort
ENH: dtitractstat: Addition of a function to save the original fibers with the arclength as a scalar field
BUG: dtitractstat: Rewrote arclength computation function
BUG: dtitractstat: If "ad" is given as a command line argument, it is modified internally to be interpreted as "l1"
ENH: dtitractstat: Computation of statistics stops before last fiber point instead of after last final point
ENH: DTIAtlasFiberAnalyzer: Saves original fibers with new arclength field instead of resampled fibers
ENH: SuperBuild passes Subversion_SVN_EXECUTABLE to its subprojects
BUG: DTIAtlasFiberAnalyser_BINARY_DIR & DTIAtlasFiberAnalyser_SOURCE_DIR had been removed from DTIAtlasFiberAnalyzer's CMakeLists.txt
BUG: Launcher.cxx had not been added
COMP: trouble building within NamicExternalProjects
BUG: Looks for external executables first in DTIATlasFiberAnalyzer's directory and then in system paths
ENH: dtitractstat now allows to specify a step smaller than 0.1 if the option --rodent is selected.
ENH: DTIAtlasFiberAnalyzer now allows to specify sampling step for fibers
BUG: DTIAtlasFiberAnalyzer was crashing if the CSV file given was a folder
BUG: DTIAtlasFiberAnalyzer was crashing if the CSV file was containing an extra empty line
BUG: Removing installation bug on Linux introduced by installation on Windows
BUG: Install windows should work
BUG: rpath on Mac and main window appearing under Slicer window
ENH: Installation process updated and rpath added
BUG: rpath Mac problem corrected
BUG: Do not look for QWT in the system paths when dti_tract_stat is build as a Slicer extension since QWT is build as part of the package
ENH: Applied patch given by Hans Johnson to build dti_tract_stat
Merge pull request #515 from fbudin69500/update-DTIAtlasFiberAnalyzer-4.3

BUG: std::isnan doesn't exist on Windows. Builds DTIAtlasFiberAnalyzerLa...
Merge pull request #514 from fbudin69500/update-DTIProcess-4.3

ENH: remove DWIPrivateLibrary that was empty and improvement of packagin...
Updated TransformVisualizer: robustness and performance improvements

See details at https://www.assembla.com/spaces/slicerrt/milestones/4230303-transformvisualizer-0-2-0
Merge pull request #519 from SlicerRt/update-TransformVisualizer-4.3

Updated TransformVisualizer: robustness and performance improvements
Updated MatlabBridge to 0.10.0

Fixed loading of uint8 volumes.
Fixed Matlab launching on Mac OS X.

See details at:
https://www.assembla.com/spaces/slicerrt/milestones/4761013-matlabbridge-0-10-0
Updated MatlabBridge version ID
Merge pull request #523 from SlicerRt/update-MatlabBridge-4.3

Updated MatlabBridge to 0.10.0
Updated MatlabBridge to 0.11.0

See more details at https://www.assembla.com/spaces/slicerrt/milestones/4872233-matlabbridge-0-11-0
Merge pull request #525 from SlicerRt/update-MatlabBridge-4.3

Updated MatlabBridge to 0.11.0
Updated MatlabBridge: fixed linux build error
Merge pull request #527 from SlicerRt/update-MatlabBridge-4.3

Updated MatlabBridge: fixed linux build error