Merge branch 'devel'
Merge branch 'devel'
Added some test Rcpp and inline code
Made a C++ function that checks sequences for N, n and uninformative sites - currently little performance gain is achieved
Merge branch 'devel'
Triplet Thinning Method Error Fixed
Merge branch 'devel'
Merge branch 'devel'
Merge branch 'master' into performance
Cleaned Code for C++ speedier functions.
Changed R code for checking sequences to C++ code
Working on making basic scanning loop C++
Bit more work on C++ scan
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Merge branch 'performance' of https://github.com/Ward9250/HybRIDS into performance

Conflicts:
	R/HybRIDSObject.R
	R/SimilarityAnalysis.R
Compiled .o files
Edited inputDNA function
Got rid of object files
Removed some vector lines
Added triplet refining by partition feature