Fixed Java specific CWE snippet examples, remaining 4 failing tests should not pass (I think).
(Automake) Replace $(abs_top_srcdir) to be more portable with older Autoconf versions

This updates commit ddc0443e:

> From: Leo Chunhua Liao <chunhualiao@gmail.com>
> Date: Friday, March 28, 2014 2:02 PM
> To: "Too, Justin A." <too1@llnl.gov>
> Cc: "Daniel J. Quinlan" <dquinlan@llnl.gov>
> Subject: Re: FW: Rose Build Failure 03/28

> You can revert the line of change . Robb is working on a better fix.