- Initial commit of Nelder Mead plugin sources
- First compile of NelderMead plugin
- Nelder-Mead work
- Added NelderMead example for a simple sbml model
- Added new simplex method, simplex2, that allow user data to be passed into the callback function
- Setting up simple NM example with RoadRunner
- Added poco as a third party to Tellurium plugins
- Organized NM folder
- Added new copy constructor to TelluriumData, taking a pointer to roadrunner data as argument
- Added convenience functions to the abstract plugin interface: getPropertyValueAsString, getPropertyValueHandle and setPropertyValue(name, void*)
- Added conversion operator to Property<string> property
- Embedded the SBML model to model plugin
- Got Nelder Mead example (rr_example) minimizing a sbml model
- Removed various log statements when reading data
- Added setValue(void*) functions to Property classes
- changed name of sbml_model plugin to test_model
- added simulated data and simulated data with noise to test_model plugin
- created example using the NelderMead plugin
- Renamed sbml_model to test_model
- Added new copy constructors to TelluriumData, taking Telluriumdata object and Tellurium data pointer as arguments
- Added conversion operators to double and string properties
- Moved lmfits objective function to separate unit
- Added getNorm function to math utils
- Added various units to nm fit plugin
- Changed name of Plugin function setProperty to setPropertyByString
- Added getEuclideanNorm to Math utils
- Added more tuning parameters to NelderMead
- Added getPropertyAt function to Properties class
- Removing the 'minimization' class. Not needed, pass handle to plugin to objective function
- Got the NM plugin working using residuals and norm instead of chi square
- Added exposure of NOrm values in NM plugin
- Added calculation of Hessian matrix in NM plugin
- Added exposure of covariance matrix in NM plugin
- Added exposure of residuals in NM plugin
- Added exposure of standarized residuals in NM plugin
- Added normal probability plot of residuals in NM plugin
- Added chi and reduced chi square calculation  in NM plugin
- Added calculation of confidence limits in NM plugin
- Changed how nr of iterations and number of function evaluations are handled (not the same)
- Added NM code accept more settings on execution, max iterations, alpha, beta and gamma