added transient signle phase example, added assert to catch requirement about timeVaryingCoefficients flag in SinglePhaseDarcyCoefficients
checked parallel, added petsc.options and README file
Merge branch 'master' of github.com:erdc-cm/proteus into adding_tests
commented out stray print for vertexFlags for PlanarStraightLineGraph
added a test_poisson2d script
test script for transient groundwater flow example
[WIP] fixing dynamic linking, first on linux
fix bin/proteus script
Merge branch 'master' into cekees/daetk_rpath_fix
Add LinearAlgebraTools.py tests

Check Vec, Mat constructors
Check basic linear algebra
Check norms observe absolute homogeneity and triangle inequality
Add Vec/Mat doctests

Test with: python -m proteus.LinearAlgebraTools -v
Merge pull request #53 from erdc-cm/cekees/daetk_rpath_fix

Cekees/daetk rpath fix
fixed a few bugs in the norm calculations and tests
put in changes recommended by Aron in pull request comments except for assert for TimeVaryingCoefficients in SubsurfaceTransportCoefficients
cleaned up restructured text for README in single_phase_gw
Merge pull request #38 from erdc-cm/adding_tests

Adding tests
Merge pull request #52 from erdc-cm/add_linear_algebra_tools_tests

Add LinearAlgebraTools.py tests
added first draft for getting mass and stiffness jacobian. single_phase_gw/test_single_phase_gw.test_mass_and_stiff_jacobians has simple test that worked
Added comments about the l_1 norm function
I add my non-working docstring