bowtie2 2.2.1
tophat2 2.0.11
deleting rdkit with private version of boost
got rid of dependency on libstdc++ for coot and friends
added versions to dependencies and removed restriction to 10.9 after verifying builds
update packages consistent with 10.7 tree
Update FreePascal to version 2.6.4 and Lazarus to 1.2
mpv 0.3.6
New upstream
fix building on Xcode 5
-dev appears to need a Depends: gdcm-libsocketxx12-shlibs
-dev appears to need userland executables, too.
t1utils 1.38 from tracker
https://sourceforge.net/p/fink/package-submissions/4390/
xml-writer-pm 0.624 from tracker
https://sourceforge.net/p/fink/package-submissions/4391/
t1utils 1.38 from 10.7 by maintainer request
xml-writer-pm 0.624 from 10.7 by maintainer request
explicitly disable jack-indev to avoid lazy-linking
New upstream python33 3.3.5.
rm 10.<6 cruft
backport new version and unvarianting from 10.7+