Initial commit.
Removed svn data.
ADded gitignore
Fixed a small bug.
Fixed bugs in exon finder.
Refactored the T*S thresholding code into distal_exons.py.
Fixed a small bug in the fast gtf parsing code which would duplicate the first exon of the file.
More tuning.
Made a couple small, cosmetic changes to compare annotations.
Removed old file.
"Removed splcied exon filtering in exon clustering code."
Extended coma[pre annotations to reutrn counts, along with some cleanup.
Added code to speed up db deletes.

Cleaned up exon finding code.
Refactored disocover exons a bit.
Finished the fast wiggle parser.
Renmaed the wiggle file, and fixed a couple of small formatting issues.
Added the python cytypes interface to the fast wiggle parser.
Added clustering code.
Added more clustering code.
Added clustering code, but there appears to be a bug.