Added make-import-overlap script.
make-import-overlap reads command line parameters for chunk-size, min, max and image-type
Added clean-import-overlap
Added import-and-align.bsh
Added create-jobs
Aded submit-jobs
Adjusted alignment parameters to AL-Z0613-14
Do not print but submit jobs
Adjusted SIFT octave size range to cope with 1:2 image dimensions (my bad ;))
mkdir -p in create-jobs as we do not want to be warned that the directory already exists
added clean-trakem2-mipmaps and projects to wipe the chunks directories
for saving memory/restarting
Added scripts backup-projects and restore-projects for doing exactly that
Added script to align overlapping projects and job generator and submitter
Adjusted elastic alignment parameters to the more significant distortion
observed at field of view changes from 4096x4096 > 4096x8192
Added documentation
Added missing creator for aligning series of chunks
Merge branch 'aside'
More documentation
Added script, job creator and submitter for generating scaled and
cropped exports for visual results inspection
Added missing Beanshell for exporting geometrically interpolated chunk transitions