[FEATURE] moved fiona from sandbox_weese to github
[FIX] switched to mismatches-only mode
[FIX] re-enabled old behavior, indel correction, only mismatches in overlap, consensus, max overlapsum
[FIX] unused-variable-warning removed
[FIX] fixed concurrency bug
[FIX] restored ISMB behavior with defines, added define sections for
ISMB and indels
[FIX] removed overlapSumCutoff hack
increased allowed overlap errors to at least 2
Merge branch 'master' of github.com:seqan/seqan into feature/fiona
[DOC] Readme updated
[FIX] fixed warnings
[FIX] fixed includes
[FIX] master version fix and include fix
[FIX] version.h include
[FIX] no longer add line breaks in output file
[FIX] disabled line breaking
[TEST] added app test
Merge branch 'master' into feature/fiona
Merge pull request #384 from weese/hotfix/snp-store

[FIX] snp_store - added some missing defaults
[FIX] defined missing default values and created 2 fiona targets and added them and compute_gain to KNIME