Initial revision


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@2 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Added html directory, html files.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@6 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Added pydoc-ed HTML to new doc directory.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@7 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Minor changes.  Spacing of ATOM field changed to work with webmol.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@8 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Fixed CGI bug that allowed a refresh page to go on infinitely if an error occurred in PDB2PQR.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@9 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Fixed broken link to APBS documentation.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@10 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Fixed function that attempted to read non-standard PDB lines... now should work.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@11 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
A few minor changes.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@12 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Took extra print statements out of hydrogens.py


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@13 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
One more print statement!


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@14 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Updated documentation


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@15 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Added ability to force GLU protionation to neutral (HE1 or HE2 present) by changing the PDB residue name to GLH, a la HSP.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@16 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Added support for GLH


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@17 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Cleaned up fixed HIS protontation states HIE/HSE, HIP/HSP, HID/HSD


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@18 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Small speed fix in hydrogens.py


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@19 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
More time-saving fixes.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@20 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Massive hydrogen optimization reworking.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@21 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Some angle fixes.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@22 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Added rebuildMethyl routine, updated documentation.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@23 a31b80ef-cfbe-4eed-bdb8-f46006999a5b
Updated inputgen for new enum definitions.


git-svn-id: https://svn.code.sf.net/p/pdb2pqr/code/trunk@24 a31b80ef-cfbe-4eed-bdb8-f46006999a5b