removed back-up files
get numbering right
work toward adding position dependent transitions
work toward adding position dependent transitions
work toward adding position dependent transitions
work toward adding position dependent transitions
work toward adding position dependent transitions
fix s in vignettes package
added a sketch of the PCA correction
updated doc to include distance dependence
PCA correction code
PCA correction code
PCA correction code
PCA correction code
PCA correction code
big fix for numbering
Fixed some issues with subset for speed
vignette updated for 1.0.4
doc and vignette updates
doc and vignette updates