Initial commit of src, etc
Progress on sample reading and parsing
Fixes to templates service, added basic js files
Added some html and ajax so we can more easily test services
Merge branch 'master' of
https://github.com/brendanofallon/NGSDataServices.git

Conflicts:
	WebContent/WEB-INF/index.html
	src/ngs/template/DirTemplateSource.java
	src/spring.xml
Added basic FastQ file tracking elements
Merge upstream changes
Merge branch 'master' of https://github.com/brendanofallon/NGSDataServices.git
More progress on FastqService, now functional yet.
Created fake fastq source for testing
Progress on fastq reading
FastQService now passes some basic unit tests
Update to spring.xml
Improvements to spring context handling, minor updates to js
Progress on reading variants and converting them to JSON
Added sample vcf for testing
A few bug fixes and a test for GetSampleVariants service
Quick changes to include Sample Log and Variants

Quick changes to include SampleLog and SampleVariants in the
NGSDataServices json.
Update web.xml, GetSampleQC
Quins changes