bug fix in pipeline_readqc.py
Merge branch 'master' of ssh://github.com/CGATOxford/cgat
Merge branch 'Scrum-2014-10' of ssh://github.com/CGATOxford/cgat
fix NormalizeBed bugs
Hilbert curves for pipeline_windows report
Merge branch 'Scrum-2014-10'
pipeline_mapping.py - fixed plot in report. pipeline_annotations.py - fixed bug in importRNAAnnotationFromUCSC, added option for extracting pseudogene info from flybase/Ensembl annotations
bam2stats.py - altered rna coverage counter for alignments and added appropriate tests
permit running multiple statements locally
run multiple targets in sequence
pep8
Merge branch 'master' of ssh://github.com/CGATOxford/cgat
updated cancer exome pipeline
Merge branch 'master' of github.com:CGATOxford/cgat
Merge branch 'master' of ssh://github.com/CGATOxford/cgat
Fixed pep8 violations in PipelineGeneset
bugfix - throwing error created error
Merge branch 'master' of ssh://github.com/CGATOxford/cgat
pep8 changes
added notebook.js