Reverted, simplified and fixed job resetting code
added archive_files support. Moved get_align
Hardened rollback_table eval
fixed intermediate file naming suffix
implemented batch mode
deprecated get_Experiment in favour of experiment (Set standard interface)
Hardened run_IDR eval. Fixed bam file param fetching
implemented replicate merging
Now uses get_set_prefix_from_Set for set naming
Now get control experiment from ResultSet. Implemented archive_files
Many fixes, now running
get_all_states now sets empty array ref instead of throwing if not stored. _compare_return_types now handles undef Storables