Fix logger class name #155
Updated org.biojava3.modfinder package to use slf4j
Updated org.biojava3.ontology package to use slf4j #155
Updated org.biojava3.phylo package to use slf4j for logging #155
Modified class name (and references) from "ProgessListenerStub" to
"ProgressListenerStub"
Added log4j configuration to org.biojava3.modfinder,
org.biojava3.ontology, org.biojava3.phylo #155
Merge remote-tracking branch 'upstream/master'
Merge pull request #177 from benjamintboyle/master

Updated packages to use slf4j for logging #155