missed one
Refactor main script to use argparse instead of optparse, moved into main function
- Moved comparison to new VariantComparator class
- Implemented 4-space indentation in bench.py, to match python standard
  practice
- Reduced number of lines that overflow PEP-8 79 character limit
- Added writer functionality to all print statements, default to stdout
Fixed indentation in bench.py file
Moved python source in preparation for building pip-installable package
Moved bash and perl script into scripts dir
Added first try at sortByRef perl to python translation...its a bit hacky for now
Added basic unittests for SMaSH
Merge branch 'master' of https://github.com/andrewmillspaugh/smash
back out VariantComparator class for now
rename package
comment out VariantComparator tests for now
nice formatting of licensing text