test commit
# Please enter the commit message for your changes. Lines starting
# with '#' will be ignored, and an empty message aborts the commit.
# On branch master
# Changes to be committed:
#   (use "git reset HEAD <file>..." to unstage)
#
#	new file:   jython-engine.jar
#	new file:   jythonlib.jar
#
# Changes not staged for commit:
#   (use "git add <file>..." to update what will be committed)
#   (use "git checkout -- <file>..." to discard changes in working directory)
#
#	modified:   .DS_Store
#	modified:   .idea/workspace.xml
#	modified:   ExonReads/.DS_Store
#	modified:   src/.DS_Store
#
# Untracked files:
#   (use "git add <file>..." to include in what will be committed)
#
#	.idea/libraries/jython_engine.xml
#	EGG-INFO/
#	ExonReads/reads_only_locs2.py
#	ExonReads/reads_only_locs_java.py
#	bamLocs.txt
#	genetic_map_HapMapII_GRCh37/.DS_Store
#	out/
#	pysam/
#	src/com/example/mutationfilter/CmToMbMap.class
#	src/com/example/mutationfilter/CrossReference.class
#	src/com/example/mutationfilter/ExonRead.class
#	src/com/example/mutationfilter/FamilyDataGroup.class
#	src/com/example/mutationfilter/Filter.class
#	src/com/example/mutationfilter/FilterProgram.class
#	src/com/example/mutationfilter/Flags.class
#	src/com/example/mutationfilter/GenericFilter.class
#	src/com/example/mutationfilter/HomozygousRegions$EndPoints.class
#	src/com/example/mutationfilter/HomozygousRegions.class
#	src/com/example/mutationfilter/InheritanceFilter.class
#	src/com/example/mutationfilter/Mutation.class
#	src/com/example/mutationfilter/MutationTypeFilter.class
#	src/com/example/mutationfilter/QualityFilter.class
#	src/com/example/mutationfilter/SnpFilter.class
#	src/com/example/mutationfilter/TabFileReader.class
#	src/com/example/mutationfilter/TabFileWriter.class