Replace call to unix 'cmp' command with Java function
Don't use a case-insensitive compare
Merge pull request #71 from wtsi-npg/master

pull changes from wtsi master (version 1.15) to devel
bugfix: index reads should not be merged if second BC paramters given
Add test data and inital test for dual index run
Add data and tests for dual index run
Merge pull request #72 from dkj/devel

bugfix: index reads should not be merged if second BC paramters given
Merge remote branch 'wtsi-npg/devel' into devel
Changed version string from 1.15 to 1.16, and changed tests to not fail when version string changes
Updated project.properties, and changed tabs to spaces. And removed a javac warning.
Update Changes file
Merge pull request #68 from jenniferliddle/devel

Replace call to unix 'cmp' command with a Java function
Merge pull request #73 from wtsi-npg/devel

Release 1.16