Add branch-specific link for downloading the JAR file if unfound
Also modify link in bf.bat
IM3Reader for Perkin-Elmer Nuance
Added some more record types + parsing of spectral library (.csl) files
Reader for Amaris FlowSight .cif format

Conflicts:

	components/formats-api/src/loci/formats/readers.txt
Was not populating the pixel metadata - now it does.
One last tweak - turn off saveOriginalMetadata
Fix up indentation and remove tabs
FlowSight: fix a couple of minor issues with metadata population and the 'in' variable
Fix invalid channel IDs
Fix FlowSight format name
#1315 modifications as suggested by @melissalinkert + better parsing of some records
FlowSight: add a space to make mask channel names more readable
Merge pull request #1315 from LeeKamentsky/im3

IM3Reader for Perkin-Elmer Nuance
Merge pull request #1339 from melissalinkert/lee-kamentsky-amaris

Amaris FlowSight
Merge pull request #1302 from sbesson/rebased/develop/tools_download_link

Add branch-specific link for downloading the JAR file if unfound (rebased onto develop)