bump version to 0.8-rc1
Merge branch 'develop' into qa

# By Gerhard Weis (31) and Daniel Yazbek (4)
* develop: (35 commits)
  make sure we read the whole json file before parsing it
  fetch species name from sdm for projection experiment
  capture addational maxent outputs
  let projections generate biomod2 style filenames
  fix race condition when starting jobs
  pretty print params.json
  ensure all csv files have proper file extension
  fix projection output conversion to gtiff
  do a similar character replacement for species name as biomod does
  unify variable naming in R scripts to avoid copy/paste errors and maybe extract common parts
  update model output descriptors to handle species name in filenames
  test json formatting of initial content data
  remove old non functioning tests
  pass species metadata into sdm script
  job execution now get’s result folder as context (not experiment)
  rename type and format to genre and mimetype in output description
  added support for biodiverse perl script
  put output description onto toolkit remove most algorithm specific modules
  move all simple parameter vocabs into xml schema
  make sure pseudo absences are marked with 0 and not NA before calculating accuracy measures
  ...
Merge branch 'develop' into qa

* develop:
  fix packaging
  can’t redistribute
  develop next version

Conflicts:
	setup.py
Merge branch 'develop' into qa

* develop:
  make internal access configurable via env vars
Merge branch 'develop' into qa

* develop: (24 commits)
  import threshold values from csv files and attach to dataset
  skip nodata values when applying threshold
  capture maxent thresholds as separate output
  add thresholding to biodiverse.pl and fetch new parameters
  update projection to new param structure
  get location of maxent.jar from environment variable
  adapt sdm job utility to new job parameter structure
  remove unused file
  turn job types into named utilities
  adapt to harmonised job parameter structure
  update sdm algorithms to new parameter layout
  remove unused files
  adapt to new parameter data structure
  describe biodiverse outputs
  convert outputs to geotiff
  project input files to epsg:3577 before processing
  define rout output for projection experiments
  make sure enviro data used in projection has a map projection set
  make sure environmental rasterstack has projection set
  don’t rely too much on global variables
  ...
push version to 0.9.0-rc1
Merge branch 'develop' into qa

* develop:
  don’t fail the wohle import in case we can’t find a threshold in whatever file we read
  bump version

Conflicts:
	setup.py
Merge branch 'develop' into qa

* develop:
  check fi nodata value is defined before trying to compare it against value
Merge branch 'develop' into qa

* develop:
  make sure status is never undefined and log error
Merge branch 'develop' into qa

* develop:
  BCCVLII-146: set allowed value ranges for biomod2 parameters
  BCCVLII-149: fix avlue range of weighted response weights for biomod experiments
Merge branch 'develop' into qa

* develop:
  fix accidentially broken eval.R
  fix bioclim and domain for single climate layer
Merge branch 'develop' into qa

* develop:
  bump version
  cleanup
  remove breakpoint
  don't fail when importing missing threshold values
  add user and experiment details to job context dictionary
  fix biomod sdm model extraction
  todo note
  new task names
  added some notes
  merge latest changes made by Erin into our R scripts
  set values to 0, 1 or nodata during thresholding for biodiverse
  fix plone users api call
  biodiverse is not yet a content based toolkit
  update biodiverse task to run via message queue
  don’t manipulate R search path as it is setup by execution environment
  use after_commit_task helper to schedue background tasks
  send sdm and project tasks to message queue
  remove async related imports
  bump develop version
release 1.5.1-rc1
back to development