Delivery calculation updated, 2 * the maximum possible clock synch error is now added to the delay not just 1 *
Various calculations updated.
-- Rho once again uses the number of nodes.
-- xMax buffer function no longer used.
-- RecentPast size now respects the configured upper limit.  Previously the recent past kept adding latencies regardless. Undermined our calculations and assumptions.
-- The counter for latencies that have exceeded the qThreshold was only being incremented by one, not by the number of latencies that exceeded qThreshold.  Fixed.
-- qThreshold set to 1.05.  I.e. all latencies are multiplied by 1.05 and then compared to xMax.
-- DeliveryManager has been completedly overhauled, with old redundant methods removed.
-- Now only one delivery method, that does not require a timedOutQueue, but instead relies on a new isDelivered() method provided by each MessageRecord.
-- Sequences missing according to the received messages collection in a vectorclock are now placed in the delivery set.  Not sure why this wasn't here before?
-- Profiler now records the amount of Seq and Ack placeholders created during runtime.
-- If the application tries to send a message before the initial probe period has completed, then the flow control waits before attempting to resend the message.  Prevents unhandled nullpointerexceptions.
-- FlowControl now utilises a log opposed to System.out.
-- Minimum number of members required by Aramis can now be specified statically.  Allows experiment applications to state the number of involved so that the experiments do not start until all of the required nodes are present in the current view.
-- Experiment scripts updated to take advantage of the above changes.
-- Experiment applications updated.