add licenses directory

Includes scipy and sphinx-bootstrap-theme licenses. Necessary because I copied a couple of files from their sphinx documentation areas.
Add sphinx doc area

Uses layout similar to numpy, scipy, and pandas, where each function, class, method, attribute, etc. has its own page.

Uses sphinx-bootstrap-theme and numpydoc. Currently only links to bipy.core.distance documentation.
update travis to test doc building

Tests building of docs (no errors or warnings) and links.
fix sphinx-bootstrap-theme name
conda doesn't have sphinx-bootstrap-theme

moved to an explicit pip install command
update numpydoc version in travis conf file
add strict checking in sphinx makefile
Merge branch 'master' into issue-86
address comments from @gregcaporaso

Also fix a couple of sphinx errors in the sequence docstrings
complement_map is now a static member

Also removed strange scoping/binding issue with temporary 'c' variable used to build the alphabet static variable.
Merge pull request #122 from jrrideout/issue-86

bipy sphinx docs
Add exception module to docs
Merge pull request #127 from jrrideout/exception-doc

Add exception module to docs
Remove bipy prefix from doc filenames

Fixes #131.
Support for documenting private/special methods

Adding numpydoc source so that we can extend/customize as necessary (see licenses/numpydoc.txt for license).

Added an extension to the numpydoc standard that allows a developer to tag a method to be included in the built documentation, when it would have otherwise been ignored. This is necessary in order to have special methods (e.g.  __getitem__, __str__, etc.) included in the built docs.
remove numpydoc dep from setup.py and Travis conf
Merge pull request #134 from jrrideout/issue-129

DOC: remove 'bipy.' prefix and add support for documenting special/private methods
Merge branch 'master' of github.com:biocore/bipy
removing files
Port safe_md5 to bipy

This includes the required additions to the documentation and pertinent
tests.