Small chagnes for pancancer and bionibmus
Trying to work around an issue when the cloud already has /mnt/seqware-oozie as a mount
Correcting bash script
Updating readme, bionimbus PDC is working in cluster mode now
Improving the pancancer scripts
Renaming files to remove version string
Small tweaks to the pancancer scripts
Updating these scripts to move to /tmp before downloading deb packages, this will prevent nodes overwritting each other or trying to install packages that are not completely downloaded yet. This was done because in some clouds (e.g. BioNimbus) the "vagrant" user is actually a user with a shared home directory which means provisioning processes are not isolated between master/worker nodes!
Updating the docs to point to the correct name, version, and URL
Info on changes for BioNimbus

Details on what needs to be done specifically for BioNimbus.
Update to oozie version
Update Seqware to 1.0.13 and HelloWorld to 1.0.13
Adding ulimit setting for both the system wide file limit and also the individual users.
Enforce Java 7 for tomcat (not sure why tomcat7 ignores
update-alternatives call on reboot)
Update documentation to match SeqWare version

Also add instructions on launching Vagrant with EBS volumes
Merge branch 'feature/brian_1.2_features' of github.com:CloudBindle/Bindle into feature/brian_1.2_features
Update readme with instructions for manually creating a persistent image
Wait for HDFS to exit safemode before edits
Revert "Wait for HDFS to exit safemode before edits"

This reverts commit 7d30273b9fe1d9c5e6ae513e454a6abcd9a2cc2c.
Wait for HDFS to exit safemode before edits