Deleted the splitting of the input and command space learning update.
The inSpace variabel used to update first the input space then the
command space has been deleted. Now all the learing occurs at once.
This has fixed an issue with the cells activeState arrays not containing
the correct last time the cell was active.

The reinforcement of a level is achevied by how much of the new input
was predicted. This is a new feature also. The top level needs to
decide whether the inputs are behaving correctly. This still needs to be
implemented though.