see #6 and #7
I believe this, along with an update to toolshed fixes #6 and #7. @superbobry ?
bump toolshed required version. see #7
WIP: merge overlapping pairs (set BQ to 0)
more debug info
implement Yaping's suggestions for WGBS Bis-SNP
Merge pull request #13 from ttriche/master

implement Yaping's suggestions for WGBS Bis-SNP
use quotechar=None in bias-plot. thanks @a_statham
Merge branch 'master' of https://github.com/brentp/bwa-meth
fix for python3
update versions
fix error at ends of chroms
make roc plot script more versatile
bash script to make roc plots
default to 3G for samtools sort. cloases #14.
dont use suffix for memory for the sake of supporting samtools < 0.1.19, thanks @superbobry
plots.sh includes command to generate times
update plots
Add --nome option to tabulate
Merge branch 'master' of https://github.com/brentp/bwa-meth