Portable alloca for Git

In the next patch we'll have to use alloca() for performance reasons,
but since alloca is non-standardized and is not portable, let's have a
trick with compatibility wrappers:

1. at configure time, determine, do we have working alloca() through
   alloca.h, and define

    #define HAVE_ALLOCA_H

   if yes.

2. in code

    #ifdef HAVE_ALLOCA_H
    # include <alloca.h>
    # define xalloca(size)      (alloca(size))
    # define xalloca_free(p)    do {} while(0)
    #else
    # define xalloca(size)      (xmalloc(size))
    # define xalloca_free(p)    (free(p))
    #endif

   and use it like

   func() {
       p = xalloca(size);
       ...

       xalloca_free(p);
   }

This way, for systems, where alloca is available, we'll have optimal
on-stack allocations with fast executions. On the other hand, on
systems, where alloca is not available, this gracefully fallbacks to
xmalloc/free.

Both autoconf and config.mak.uname configurations were updated. For
autoconf, we are not bothering considering cases, when no alloca.h is
available, but alloca() works some other way - its simply alloca.h is
available and works or not, everything else is deep legacy.

For config.mak.uname, I've tried to make my almost-sure guess for where
alloca() is available, but since I only have access to Linux it is the
only change I can be sure about myself, with relevant to other changed
systems people Cc'ed.

NOTE

SunOS and Windows had explicit -DHAVE_ALLOCA_H in their configurations.
I've changed that to now-common HAVE_ALLOCA_H=YesPlease which should be
correct.

Cc: Brandon Casey <drafnel@gmail.com>
Cc: Marius Storm-Olsen <mstormo@gmail.com>
Cc: Johannes Sixt <j6t@kdbg.org>
Cc: Johannes Schindelin <Johannes.Schindelin@gmx.de>
Cc: Ramsay Jones <ramsay@ramsay1.demon.co.uk>
Cc: Gerrit Pape <pape@smarden.org>
Cc: Petr Salinger <Petr.Salinger@seznam.cz>
Cc: Jonathan Nieder <jrnieder@gmail.com>
Acked-by: Thomas Schwinge <thomas@codesourcery.com> (GNU Hurd changes)
Signed-off-by: Kirill Smelkov <kirr@mns.spb.ru>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
patch-id: make it stable against hunk reordering

Patch id changes if users
1. reorder file diffs that make up a patch
or
2. split a patch up to multiple diffs that touch the same path
(keeping hunks within a single diff ordered to make patch valid).

As the result is functionally equivalent, a different patch id is
surprising to many users.
In particular, reordering files using diff -O is helpful to make patches
more readable (e.g. API header diff before implementation diff).

Change patch-id behaviour making it stable against these two kinds
of patch change:
1. calculate SHA1 hash for each hunk separately and sum all hashes
(using a symmetrical sum) to get patch id
2. hash the file-level headers together with each hunk (not just the
first hunk)

We use a 20byte sum and not xor - since xor would give 0 output
for patches that have two identical diffs, which isn't all that
unlikely (e.g. append the same line in two places).

Add a new flag --unstable to get the historical behaviour.

Add --stable which is a nop, for symmetry.

Signed-off-by: Michael S. Tsirkin <mst@redhat.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
patch-id: document new behaviour

Clarify that patch ID is now a sum of hashes, not a hash.
Document --stable and --unstable flags.

Signed-off-by: Michael S. Tsirkin <mst@redhat.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
patch-id-test: test --stable and --unstable flags

Verify that patch ID is now stable against diff split and reordering.

Signed-off-by: Michael S. Tsirkin <mst@redhat.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
tree-diff: rework diff_tree() to generate diffs for multiparent cases as well

Previously diff_tree(), which is now named ll_diff_tree_sha1(), was
generating diff_filepair(s) for two trees t1 and t2, and that was
usually used for a commit as t1=HEAD~, and t2=HEAD - i.e. to see changes
a commit introduces.

In Git, however, we have fundamentally built flexibility in that a
commit can have many parents - 1 for a plain commit, 2 for a simple merge,
but also more than 2 for merging several heads at once.

For merges there is a so called combine-diff, which shows diff, a merge
introduces by itself, omitting changes done by any parent. That works
through first finding paths, that are different to all parents, and then
showing generalized diff, with separate columns for +/- for each parent.
The code lives in combine-diff.c .

There is an impedance mismatch, however, in that a commit could
generally have any number of parents, and that while diffing trees, we
divide cases for 2-tree diffs and more-than-2-tree diffs. I mean there
is no special casing for multiple parents commits in e.g.
revision-walker .

That impedance mismatch *hurts* *performance* *badly* for generating
combined diffs - in "combine-diff: optimize combine_diff_path
sets intersection" I've already removed some slowness from it, but from
the timings provided there, it could be seen, that combined diffs still
cost more than an order of magnitude more cpu time, compared to diff for
usual commits, and that would only be an optimistic estimate, if we take
into account that for e.g. linux.git there is only one merge for several
dozens of plain commits.

That slowness comes from the fact that currently, while generating
combined diff, a lot of time is spent computing diff(commit,commit^2)
just to only then intersect that huge diff to almost small set of files
from diff(commit,commit^1).

That's because at present, to compute combine-diff, for first finding
paths, that "every parent touches", we use the following combine-diff
property/definition:

D(A,P1...Pn) = D(A,P1) ^ ... ^ D(A,Pn)      (w.r.t. paths)

where

D(A,P1...Pn) is combined diff between commit A, and parents Pi

and

D(A,Pi) is usual two-tree diff Pi..A

So if any of that D(A,Pi) is huge, tracting 1 n-parent combine-diff as n
1-parent diffs and intersecting results will be slow.

And usually, for linux.git and other topic-based workflows, that
D(A,P2) is huge, because, if merge-base of A and P2, is several dozens
of merges (from A, via first parent) below, that D(A,P2) will be diffing
sum of merges from several subsystems to 1 subsystem.

The solution is to avoid computing n 1-parent diffs, and to find
changed-to-all-parents paths via scanning A's and all Pi's trees
simultaneously, at each step comparing their entries, and based on that
comparison, populate paths result, and deduce we could *skip*
*recursing* into subdirectories, if at least for 1 parent, sha1 of that
dir tree is the same as in A. That would save us from doing significant
amount of needless work.

Such approach is very similar to what diff_tree() does, only there we
deal with scanning only 2 trees simultaneously, and for n+1 tree, the
logic is a bit more complex:

D(T,P1...Pn) calculation scheme
-------------------------------

D(T,P1...Pn) = D(T,P1) ^ ... ^ D(T,Pn)	(regarding resulting paths set)

    D(T,Pj)		- diff between T..Pj
    D(T,P1...Pn)	- combined diff from T to parents P1,...,Pn

We start from all trees, which are sorted, and compare their entries in
lock-step:

     T     P1       Pn
     -     -        -
    |t|   |p1|     |pn|
    |-|   |--| ... |--|      imin = argmin(p1...pn)
    | |   |  |     |  |
    |-|   |--|     |--|
    |.|   |. |     |. |
     .     .        .
     .     .        .

at any time there could be 3 cases:

    1)  t < p[imin];
    2)  t > p[imin];
    3)  t = p[imin].

Schematic deduction of what every case means, and what to do, follows:

1)  t < p[imin]  ->  ∀j t ∉ Pj  ->  "+t" ∈ D(T,Pj)  ->  D += "+t";  t↓

2)  t > p[imin]

    2.1) ∃j: pj > p[imin]  ->  "-p[imin]" ∉ D(T,Pj)  ->  D += ø;  ∀ pi=p[imin]  pi↓
    2.2) ∀i  pi = p[imin]  ->  pi ∉ T  ->  "-pi" ∈ D(T,Pi)  ->  D += "-p[imin]";  ∀i pi↓

3)  t = p[imin]

    3.1) ∃j: pj > p[imin]  ->  "+t" ∈ D(T,Pj)  ->  only pi=p[imin] remains to investigate
    3.2) pi = p[imin]  ->  investigate δ(t,pi)
     |
     |
     v

    3.1+3.2) looking at δ(t,pi) ∀i: pi=p[imin] - if all != ø  ->

                      ⎧δ(t,pi)  - if pi=p[imin]
             ->  D += ⎨
                      ⎩"+t"     - if pi>p[imin]

    in any case t↓  ∀ pi=p[imin]  pi↓

~

For comparison, here is how diff_tree() works:

D(A,B) calculation scheme
-------------------------

    A     B
    -     -
   |a|   |b|    a < b   ->  a ∉ B   ->   D(A,B) +=  +a    a↓
   |-|   |-|    a > b   ->  b ∉ A   ->   D(A,B) +=  -b    b↓
   | |   | |    a = b   ->  investigate δ(a,b)            a↓ b↓
   |-|   |-|
   |.|   |.|
    .     .
    .     .

~~~~~~~~

This patch generalizes diff tree-walker to work with arbitrary number of
parents as described above - i.e. now there is a resulting tree t, and
some parents trees tp[i] i=[0..nparent). The generalization builds on
the fact that usual diff

D(A,B)

is by definition the same as combined diff

D(A,[B]),

so if we could rework the code for common case and make it be not slower
for nparent=1 case, usual diff(t1,t2) generation will not be slower, and
multiparent diff tree-walker would greatly benefit generating
combine-diff.

What we do is as follows:

1) diff tree-walker ll_diff_tree_sha1() is internally reworked to be
   a paths generator (new name diff_tree_paths()), with each generated path
   being `struct combine_diff_path` with info for path, new sha1,mode and for
   every parent which sha1,mode it was in it.

2) From that info, we can still generate usual diff queue with
   struct diff_filepairs, via "exporting" generated
   combine_diff_path, if we know we run for nparent=1 case.
   (see emit_diff() which is now named emit_diff_first_parent_only())

3) In order for diff_can_quit_early(), which checks

       DIFF_OPT_TST(opt, HAS_CHANGES))

   to work, that exporting have to be happening not in bulk, but
   incrementally, one diff path at a time.

   For such consumers, there is a new callback in diff_options
   introduced:

       ->pathchange(opt, struct combine_diff_path *)

   which, if set to !NULL, is called for every generated path.

   (see new compat ll_diff_tree_sha1() wrapper around new paths
    generator for setup)

4) The paths generation itself, is reworked from previous
   ll_diff_tree_sha1() code according to "D(A,P1...Pn) calculation
   scheme" provided above:

   On the start we allocate [nparent] arrays in place what was
   earlier just for one parent tree.

   then we just generalize loops, and comparison according to the
   algorithm.

Some notes(*):

1) alloca(), for small arrays, is used for "runs not slower for
   nparent=1 case than before" goal - if we change it to xmalloc()/free()
   the timings get ~1% worse. For alloca() we use just-introduced
   xalloca/xalloca_free compatibility wrappers, so it should not be a
   portability problem.

2) For every parent tree, we need to keep a tag, whether entry from that
   parent equals to entry from minimal parent. For performance reasons I'm
   keeping that tag in entry's mode field in unused bit - see S_IFXMIN_NEQ.
   Not doing so, we'd need to alloca another [nparent] array, which hurts
   performance.

3) For emitted paths, memory could be reused, if we know the path was
   processed via callback and will not be needed later. We use efficient
   hand-made realloc-style path_appendnew(), that saves us from ~1-1.5%
   of potential additional slowdown.

4) goto(s) are used in several places, as the code executes a little bit
   faster with lowered register pressure.

Also

- we should now check for FIND_COPIES_HARDER not only when two entries
  names are the same, and their hashes are equal, but also for a case,
  when a path was removed from some of all parents having it.

  The reason is, if we don't, that path won't be emitted at all (see
  "a > xi" case), and we'll just skip it, and FIND_COPIES_HARDER wants
  all paths - with diff or without - to be emitted, to be later analyzed
  for being copies sources.

  The new check is only necessary for nparent >1, as for nparent=1 case
  xmin_eqtotal always =1 =nparent, and a path is always added to diff as
  removal.

~~~~~~~~

Timings for

    # without -c, i.e. testing only nparent=1 case
    `git log --raw --no-abbrev --no-renames`

before and after the patch are as follows:

                navy.git        linux.git v3.10..v3.11

    before      0.611s          1.889s
    after       0.619s          1.907s
    slowdown    1.3%            0.9%

This timings show we did no harm to usual diff(tree1,tree2) generation.
From the table we can see that we actually did ~1% slowdown, but I think
I've "earned" that 1% in the previous patch ("tree-diff: reuse base
str(buf) memory on sub-tree recursion", HEAD~~) so for nparent=1 case,
net timings stays approximately the same.

The output also stayed the same.

(*) If we revert 1)-4) to more usual techniques, for nparent=1 case,
    we'll get ~2-2.5% of additional slowdown, which I've tried to avoid, as
   "do no harm for nparent=1 case" rule.

For linux.git, combined diff will run an order of magnitude faster and
appropriate timings will be provided in the next commit, as we'll be
taking advantage of the new diff tree-walker for combined-diff
generation there.

P.S. and combined diff is not some exotic/for-play-only stuff - for
example for a program I write to represent Git archives as readonly
filesystem, there is initial scan with

    `git log --reverse --raw --no-abbrev --no-renames -c`

to extract log of what was created/changed when, as a result building a
map

    {}  sha1    ->  in which commit (and date) a content was added

that `-c` means also show combined diff for merges, and without them, if
a merge is non-trivial (merges changes from two parents with both having
separate changes to a file), or an evil one, the map will not be full,
i.e. some valid sha1 would be absent from it.

That case was my initial motivation for combined diffs speedup.

Signed-off-by: Kirill Smelkov <kirr@mns.spb.ru>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
combine-diff: speed it up, by using multiparent diff tree-walker directly

As was recently shown in "combine-diff: optimize
combine_diff_path sets intersection", combine-diff runs very slowly. In
that commit we optimized paths sets intersection, but that accounted
only for ~ 25% of the slowness, and as my tracing showed, for linux.git
v3.10..v3.11, for merges a lot of time is spent computing
diff(commit,commit^2) just to only then intersect that huge diff to
almost small set of files from diff(commit,commit^1).

In previous commit, we described the problem in more details, and
reworked the diff tree-walker to be general one - i.e. to work in
multiple parent case too. Now is the time to take advantage of it for
finding paths for combine diff.

The implementation is straightforward - if we know, we can get generated
diff paths directly, and at present that means no diff filtering or
rename/copy detection was requested(*), we can call multiparent tree-walker
directly and get ready paths.

(*) because e.g. at present, all diffcore transformations work on
    diff_filepair queues, but in the future, that limitation can be
    lifted, if filters would operate directly on combine_diff_paths.

Timings for `git log --raw --no-abbrev --no-renames` without `-c` ("git log")
and with `-c` ("git log -c") and with `-c --merges` ("git log -c --merges")
before and after the patch are as follows:

                linux.git v3.10..v3.11

            log     log -c     log -c --merges

    before  1.9s    16.4s      15.2s
    after   1.9s     2.4s       1.1s

The result stayed the same.

Signed-off-by: Kirill Smelkov <kirr@mns.spb.ru>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
git-p4: explicitly specify that HEAD is a revision

'git p4 rebase' fails with the following message if there is a file
named HEAD in the current directory:

	fatal: ambiguous argument 'HEAD': both revision and filename
	Use '--' to separate paths from revisions, like this:
	'git <command> [<revision>...] -- [<file>...]'

Take the suggestion above and explicitly state that HEAD should be
treated as a revision.

Signed-off-by: Vlad Dogaru <vdogaru@ixiacom.com>
Acked-by: Pete Wyckoff <pw@padd.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Merge branch 'jk/commit-dates-parsing-fix'

Finishing touches for portability.

* jk/commit-dates-parsing-fix:
  t4212: loosen far-in-future test for AIX
  date: recognize bogus FreeBSD gmtime output
Merge branch 'jc/rev-parse-argh-dashed-multi-words'

Make sure that the help text given to describe the "<param>" part
of the "git cmd --option=<param>" does not contain SP or _,
e.g. "--gpg-sign=<key-id>" option for "git commit" is not spelled
as "--gpg-sign=<key id>".

* jc/rev-parse-argh-dashed-multi-words:
  parse-options: make sure argh string does not have SP or _
  update-index: teach --cacheinfo a new syntax "mode,sha1,path"
  parse-options: multi-word argh should use dash to separate words
Merge branch 'mr/msvc-link-with-invalidcontinue'

* mr/msvc-link-with-invalidcontinue:
  MSVC: link in invalidcontinue.obj for better POSIX compatibility
Merge branch 'ib/rev-parse-parseopt-argh'

Finishing touch to a new topic scheduled for 2.0.

* ib/rev-parse-parseopt-argh:
  rev-parse: fix typo in example on manpage
Merge branch 'mr/opt-set-ptr'

OPT_SET_PTR() implementation was broken on IL32P64 platforms;
it turns out that the macro is not used by any real user.

* mr/opt-set-ptr:
  parse-options: remove unused OPT_SET_PTR
  parse-options: add cast to correct pointer type to OPT_SET_PTR
  MSVC: fix t0040-parse-options crash
Merge branch 'mh/update-ref-batch-create-fix'

* mh/update-ref-batch-create-fix:
  update-ref: fail create operation over stdin if ref already exists
Merge branch 'jl/nor-or-nand-and'

Eradicate mistaken use of "nor" (that is, essentially "nor" used
not in "neither A nor B" ;-)) from in-code comments, command output
strings, and documentations.

* jl/nor-or-nand-and:
  code and test: fix misuses of "nor"
  comments: fix misuses of "nor"
  contrib: fix misuses of "nor"
  Documentation: fix misuses of "nor"
Merge branch 'jk/pack-bitmap'

* jk/pack-bitmap:
  pack-objects: do not reuse packfiles without --delta-base-offset
  add `ignore_missing_links` mode to revwalk
Merge branch 'bp/commit-p-editor' into maint

* bp/commit-p-editor:
  run-command: mark run_hook_with_custom_index as deprecated
  merge hook tests: fix and update tests
  merge: fix GIT_EDITOR override for commit hook
  commit: fix patch hunk editing with "commit -p -m"
  test patch hunk editing with "commit -p -m"
  merge hook tests: use 'test_must_fail' instead of '!'
  merge hook tests: fix missing '&&' in test
Merge branch 'mm/status-porcelain-format-i18n-fix' into maint

* mm/status-porcelain-format-i18n-fix:
  status: disable translation when --porcelain is used
Update draft release notes to 1.9.2

Signed-off-by: Junio C Hamano <gitster@pobox.com>
Merge branch 'maint'

* maint:
  Update draft release notes to 1.9.2
Update draft release notes to 2.0

Signed-off-by: Junio C Hamano <gitster@pobox.com>