Added AlignmentCoverageSqliteDataWriter and AlignmentHBaseDataWriter.
Merge branch 'develop' of github.com:opencb/opencga into develop
Merge branch 'develop' of github.com:opencb/opencga into develop
Refactored AlignmentCoverageSqliteDataWriter.java
Merge branch 'develop' of github.com:opencb/opencga into develop
Merge branch 'develop' of github.com:opencb/opencga into develop
AlignmentRegion Coverage HBase DataWriter added.

Added small SAM file for testing.
Other minor changes
Minor changes
AlignmentRegionCoverageHBaseDataWriter tested.

Test added.
Added AlignmentRegionHBaseDataWriter with protobuf

Also added AlignmentProto to Protobuf management.
Merge branch 'develop' of https://github.com/j-coll/opencga into develop
Added empty ProtoToAlignment.
Developed ProtoToAlignment.
Added simple header to the Proto Specification.
Renamed ProtoToAlignment to AlignmentProtoHelper.
Added qualities and insertsize to alignment proto.
Improved AlignmentRegion HBase DataWriter
Deprecated some old Alignment DataWriters

@Deprecated
AlignmentHBaseDataWriter
AlignmentCoverageSqliteDataWriter
Merge branch 'develop' of https://github.com/jmmut/opencga into develop
Added differences existence check.