Further devel

Have fun!
Yes Mario, That is how it will be in Samplesheets. For example, this is how
a sample sheet looks like.

C43L4ACXX,4,P981_130,hg19,GAGATTCC-TAATCTTA,M__Wahren_14_01,N,,Bahram
Amini,M__Wahren_14_01
C43L4ACXX,4,P981_127,hg19,GAGATTCC-CCTATCCT,M__Wahren_14_01,N,,Bahram
Amini,M__Wahren_14_01
C43L4ACXX,4,P981_222,hg19,CGCTCATT-TAATCTTA,M__Wahren_14_01,N,,Bahram
Amini,M__Wahren_14_01
C43L4ACXX,5,P981_108,hg19,ATTACTCG-GTACTGAC,M__Wahren_14_01,N,,Bahram
Amini,M__Wahren_14_01


On Thu, Jun 26, 2014 at 11:49 AM, Mario Giovacchini <
notifications@github.com> wrote:

> In scilifelab_pipeline/common/__init__.py:
>
> >
> >          # Iterate over the samples in the project
> >          for sample in project.get('samples', []):
> >              # If specific samples are specified, skip those that do not match
> > +            ## Ask Guilermo about this substitution -- I suspect we can remove it later
> >              ## this appears to be some scilifelab-specific naming process?
>
> I wonder why we do this? It seems like we just make sample names
> G__Spong_13_01 instead of G.Spong_13_01 and change them back later.
> Something with SampleSheet.csv maybe?
>
> —
> Reply to this email directly or view it on GitHub
> <https://github.com/SciLifeLab/scilifelab_pipeline/pull/4/files#r14232575>
> .
>