Started transfer of special invariants into their own database
Added IES, IVS and fractional chromatic code
Added compile options in Makefile
Made IDV recursive for speed.
More work on the special invariant section
Finished new invariant calculation pulling from special
Update special2 now has a compute flag
Updated clear_invariant to remove from final db as well. Fixed has_chromatic_gap to work with new specials
Added the special IVS
New setup ready for testing. Trying full database repopulation
Creates missing directories.
Fixed a bug that called an old version of max_flow.
Starting with "finalized" form of the database already.
Removed unused invariants
Built a better distinct sequence checker
Updated sequences to new form.
Updated relations code to work with new format.
Finished most changes for new special update invariants
Removed the function, attach_ref_table since it is no longer used
Fixed raw_dump_lvl_1 with new_specials