Merge pull request #2171 from dominikl/filter_by_roi

Added ROI filtering option
null physical sizes of pixels objects that are illegal in model
merge develop -D none -I breaking -E exclude: PR 2191 (fix #11663, #11664, #11877: SQL DOMAIN; import logs (rebased); FS delete log trigger)
merge develop -D none -I breaking -E exclude

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2202 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)
  # PR 2177 chris-allan 'develop: Update upgrade check handling in OMERO.web' (user: chris-allan)
  # PR 2165 dominikl 'Inplace file path' (user: dominikl)
  # PR 2201 manics 'HQL binary data (rebased onto develop)' (user: manics)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 2195 aleksandra-tarkowska 'Minify media viewer only' (user: aleksandra-tarkowska)
  # PR 2127 dpwrussell 'Working view to email announcements to selected users, groups, email addresses and/or all users' (user: dpwrussell)
  # PR 1385 manics 'Update the OMERO VirtualBox image' (user: manics)
  # PR 2204 dominikl 'Workaround for Java 7 bug' (user: dominikl)
  # PR 2160 dominikl 'Warning dialog before deletion of linked images' (user: dominikl)
  # PR 1960 will-moore 'Remove cut link 11882' (user: will-moore)
  # PR 2036 joshmoore 'DSL Map Type' (exclude comment)
  # PR 2194 aleksandra-tarkowska 'Css js cleanup' (user: aleksandra-tarkowska)
  # PR 2189 dominikl 'Bugfix: Weird behaviour after switching users' (user: dominikl)
  # PR 2192 ximenesuk 'Check for duplicate pixels IDs when adding to list.' (user: ximenesuk)
  # PR 2128 jburel 'Open with develop' (user: jburel)
  # PR 2188 ximenesuk 'Close the RFS and kill the root session.' (user: ximenesuk)
Already up-to-date.

Merged PRs:
  # PR 2191 mtbc 'fix #11663, #11664, #11877: SQL DOMAIN; import logs (rebased); FS delete log trigger'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 986 imagejan 'Make macro recording work with Exporter' (user: imagejan)
  # PR 991 melissalinkert 'Only add a MetadataOnly element if no TiffData elements are present' (user: melissalinkert)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 983 melissalinkert 'Woolz: make sure the service is initialized when calling openBytes (rebased onto develop)' (user: melissalinkert)
  # PR 528 melissalinkert 'Tile performance improvements for VMS and NDPI' (user: melissalinkert)
  # PR 990 melissalinkert 'Memoization fixes (rebased onto develop)' (user: melissalinkert)
  # PR 992 rleigh-dundee 'C++: Enable stricter warnings' (user: rleigh-dundee)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (user: melissalinkert)
  # PR 978 berl 'Add writing of .v3draw format for easy loading with Vaa3D.' (user: berl)
  # PR 985 qidane 'Updating transform catalog for 2013-10-dev-1' (user: qidane)
  # PR 981 melissalinkert 'Ignore namespaces when filling in an XMLAnnotation's Value' (user: melissalinkert)
Updating 1657654..3eb2673
Merged PRs (fast-forward):
  # PR 982 melissalinkert 'Fix the download URL for stable release jars (rebased onto develop)'
  # PR 975 rleigh-dundee 'cpp: cmake: Don't enable -pedantic if it breaks long long use'
  # PR 973 rleigh-dundee 'C++: Fixes for the OME-XML model and metadata store interfaces'
  # PR 970 rleigh-dundee 'C++: Add FormatReader implementation'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 626 pwalczysko 'Add new Squash tutorial and screenshots' (user: pwalczysko)
Updating 7a0521c..ee6a045
Merged PRs (fast-forward):
  # PR 704 sbesson 'Move schema changes to the contributing documentation'

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